FastQCFastQC Report
Wed 31 May 2023
EGAF00007927835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442476
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22060.4985581138864029No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17140.3873656424303239No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16620.37561359260163263No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15510.3505274862365417No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15190.3432954555727316No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14860.33583742395067756No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12490.28227519684683466No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11810.26690713168623836No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11540.2608051058136487No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10940.2472450483190049No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9320.2106328930834667No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9290.2099548902087345No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8680.19616883175584665No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8330.18825879821730446No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7760.17537674359739283No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6630.14983863531581376No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5600.12656053661667524No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5570.12588253374194305No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5380.12158851553530586No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5170.11684249541218053No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5120.11571249062096024No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4950.11187047433081115No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4920.11119247145607897No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4810.10870646091539428No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4640.10486444462524522No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4600.10396044079226895No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4480.1012484292933402No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4450.10057042641860801No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)