FastQCFastQC Report
Sun 21 May 2023
EGAF00007927837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469030
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23980.5112679359529242No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17910.38185190712747585No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17870.3809990832142933No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17510.3733236679956506No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16450.3507238342963137No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16110.3434748310342622No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT14210.30296569515809224No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13040.27802059569750337No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11380.24262840330042854No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11360.24220199134383727No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10330.22024177557938723No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG10050.21427200818710956No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9930.211713536447562No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8910.1899665266614076No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8440.1799458456815129No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6800.14498006524102935No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6290.13410656034795215No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6160.13133488263010895No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6020.12834999893397012No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5740.12238023154169243No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5440.11598405219282348No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5180.11044069675713708No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5020.10702940110440695No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4930.1051105472997463No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT4920.10489734132145066No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4880.10404451740826813No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4830.10297848751678997No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4820.10276528153849433No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4700.10020680979894678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)