FastQCFastQC Report
Wed 31 May 2023
EGAF00007927838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469030
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30490.6500650278233802No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20730.4419759930068439No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18630.3972027375647613No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18130.3865424386499798No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG17650.37630855169178945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16420.3500842163614268No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC13780.2937978380913801No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13500.2878280706991024No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12440.26522823699976544No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12390.2641622071082873No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG11030.23516619406008143No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10620.22642474894996054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10580.225571925036778No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10560.2251455130801868No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9500.20254567938084983No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9130.19465705818391146No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8260.17610813807219156No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7850.16736669296207066No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7660.16331577937445366No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7530.16054410165661046No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6770.14434044730614246No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6590.1405027396968211No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6100.13005564676033518No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6060.12920282284715265No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6000.12792358697737885No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5600.11939534784555358No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5440.11598405219282348No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5330.11363878643157153No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5190.1106539027354327No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5160.11001428480054581No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4780.10191245762531181No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4730.10084642773383365No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4720.10063322175553802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)