FastQCFastQC Report
Wed 31 May 2023
EGAF00007927839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449759
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22090.4911519280325686No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17400.3868738591112129No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG17060.37931425496766047No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16940.3766461593875831No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16430.3653067531722545No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15220.3384034560731414No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT12710.28259579018985725No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12070.2683659470961115No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11700.26013931905753973No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11180.24857757154387125No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG9590.21322530510784662No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9450.21011252693108975No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9440.20989018563275No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8380.18632200800873358No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8240.18320922983197668No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7460.16586660856147403No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6280.1396303353573803No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5540.12317707928023675No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5460.12139834889351854No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5270.11717386422506275No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5130.11406108604830588No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5020.11161533176656832No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4980.11072596657320921No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4820.10716850579977277No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4790.10650148190475345No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4740.10538977541305454No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4650.10338870372799654No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4530.10072060814791922No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4520.10049826684957945No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4510.10027592555123965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)