FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449759
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44400.9871953646286122No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28510.6338950415667057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18970.42178144295055797No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17870.3973239001331824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17410.38709620040955267No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16740.37219933342078754No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG16370.3639727053822158No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12440.2765925751346832No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12340.2743691621512855No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12130.26969999488615015No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11940.26547551021769433No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG10500.2334583632567664No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.2265657830082333No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9750.2167827658812831No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9370.2083337965443715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8690.19321458825726667No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8570.19054649267718934No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7650.1700910932299298No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7600.16897938673823093No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7220.16053041740131938No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6280.1396303353573803No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5890.13095902472212897No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5710.12695688135201297No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5550.12339942057857653No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5420.12050898370015942No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5380.11961961850680031No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5370.11939727720846054No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5040.11206001436324788No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4970.11050362527486944No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT4960.11028128397652964No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4770.10605679930807388No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4710.10472275151803521No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4630.10294402113131701No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4620.10272167983297721No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4580.1018323146396181No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4560.10138763204293855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)