FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418948
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11140.26590412175258027No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10800.2577885560976541No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9700.23153231427289306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6600.1575374509485664No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6080.14512540935867935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4950.11815308821142481No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4810.11481138470645523No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4550.1086053639115117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4280.10216065000907035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)