FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424930
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12550.29534276233732615No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12020.2828701197844351No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10080.23721554138328668No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9550.2247428988303956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9550.2247428988303956No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9170.21580024945285106No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8190.1927376273739204No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7680.1807356505777422No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5660.13319840914974232No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5050.11884310356999976No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4940.11625444190807897No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4940.11625444190807897No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4870.11460711175958394No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4860.11437177888122749No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4690.11037111994916811No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4540.10684112677382157No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4460.10495846374697008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)