FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424930
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26920.6335161085355234No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24240.5704468971359988No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10870.25580683877344507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10600.24945285105782128No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.23109688654601937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9690.22803755912738569No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9250.21768291247970256No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8350.19650295342762336No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5980.14072906125714824No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5800.1364930694467324No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5680.1336690749064552No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.132492410514673No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5540.13037441460946508No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5410.12731508719083143No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4910.11554844327300968No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4820.11343044736780176No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4800.1129597816110889No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4720.1110771185842374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)