FastQCFastQC Report
Wed 31 May 2023
EGAF00007927862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408975
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41971.0262240968274345No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40780.9971269637508405No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11400.2787456445993031No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11360.27776758970597226No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8830.21590561770279357No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8560.20930374717281008No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7960.19463292377284674No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6520.15942294761293477No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.13130386942967173No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4820.11785561464637204No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4480.10954214805305948No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4280.10465187358640504No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4180.10220673635307781No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4160.10171770890641237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)