FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414038
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42381.0235775460223457No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40630.9813108941691342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11600.28016752085557367No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11260.2719557142098068No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9220.22268487433520595No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8360.20191383399591345No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8040.19418507479989758No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6790.16399460919046077No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5550.13404566730589948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5000.12076186243774727No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4810.11617291166511287No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4680.11303310324173144No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4340.10482129659596462No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4150.10023234582333022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)