FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007927871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454119
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11800.2598437854394993No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9040.1990667644383961No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8950.19708490505792536No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8600.18937767413387238No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7450.1640539153834127No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6950.1530435854919085No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6460.1422534621982344No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6230.13718871044814243No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.13212395869805052No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5580.12287528158918698No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5450.12001259581739589No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5410.11913176942607553No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5110.11252557149117302No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5050.11120433190419252No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5040.11098412530636244No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4840.10657999334976075No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4770.10503854716495016No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4590.10107482840400865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)