FastQCFastQC Report
Sun 21 May 2023
EGAF00007927873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410164
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15810.38545557386801377No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13120.3198720511795282No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11250.27428053168976313No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8240.2008952516554354No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7870.1918744697243054No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7000.17066344194029706No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6360.15505992724861276No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6290.15335329282920976No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA6140.14969621907334626No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6070.1479895846539433No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5840.14238207156161925No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5680.13848119288869817No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5600.13653075355223765No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5100.12434050769935928No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4500.10971221267590525No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4490.10946840775884767No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4350.10605513892004174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)