FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29870.667162515606957No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20310.4536347737521694No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13920.3109106868847955No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC13870.3097939099922496No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12930.2887985044123855No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11840.26445276815488356No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11540.25775210679960775No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11070.24725440400967577No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10360.2313961721355231No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10070.2249188661587565No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9120.20370010520038329No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8820.1969994438451075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8760.19565931157405234No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8410.18784187332623062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8380.18717180719070306No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7950.1775675259148078No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7330.16371949244723788No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7280.1626027155546919No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6620.1478612605730852No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.14518099603097492No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC6330.14138395459631867No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5750.12842934264278552No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5660.1264191442362028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5060.11301782152565124No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5050.11279446614714204No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4730.10564709403484791No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4660.10408360638528356No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4610.1029668294927376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)