FastQCFastQC Report
Wed 31 May 2023
EGAF00007927877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432220
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12440.28781638980149No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12000.27763638887603537No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG11740.27162093378372126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11430.26444866040442366No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11370.2630604784600435No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10330.2389986580907871No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9600.2221091111008283No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9590.22187774744343158No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9470.21910138355467124No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8930.20660774605524962No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8330.19272592661144788No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7890.18254592568599323No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7630.17653047059367916No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7450.1723659247605386No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7440.17213456110314193No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7280.1684327425847948No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7210.16681319698301791No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6580.15223728656702604No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5850.13534773957706725No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5460.12632455693859607No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5310.12285410207764563No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4970.11498773772615797No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4880.11290546480958771No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4550.10527046411549675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)