FastQCFastQC Report
Wed 31 May 2023
EGAF00007927878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432220
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44521.0300310027300912No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29340.6788209708019064No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19320.4469945860904169No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13690.316736846976077No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC12740.29475729952339086No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12570.290824117347647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11270.26074684188607655No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11120.25727638702512606No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9800.2267363842487622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9030.2089213826292166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8910.20614501874045627No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8770.2029059275369025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8570.19827865438896858No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8150.18856138077830734No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7730.1788441071676461No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7720.17861274351024942No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7270.1682013789273981No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7110.16449956040905095No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6200.1434454675859516No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6030.13951228541020777No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5820.13465364860487716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5470.12655592059599277No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5100.11799546527231503No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4680.10827819166165378No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4600.10642728240248021No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4560.10550182777289342No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4520.10457637314330666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)