FastQCFastQC Report
Sun 21 May 2023
EGAF00007927879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433370
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8780.20259824168724186No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8500.19613724992500634No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6950.16037104552691694No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6430.14837206082562246No Hit
CGGAACGCCGTCAGCACCGTCTGCGCCCTTGATCAGCGCCCATT6080.14029582112282807No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6030.13914207259385744No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4810.11099060848697417No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4590.10591411495950342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)