FastQCFastQC Report
Sun 21 May 2023
EGAF00007927881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437061
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8840.2022600964167473No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8070.18464241833519807No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7020.16061831186035816No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6560.15009346521423783No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6450.14757665405973078No Hit
CGGAACGCCGTCAGCACCGTCTGCGCCCTTGATCAGCGCCCATT6080.1391110165400253No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4810.11005328775617133No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4540.10387566037692679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)