FastQCFastQC Report
Sun 21 May 2023
EGAF00007927883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420609
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13740.3266691868219653No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13000.3090756498315538No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12130.2883913563428267No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9780.23251998887327663No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7700.183067884900228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6730.16000608641279668No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6640.15786633191396285No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5630.1338535314270498No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5160.1226792579331398No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5110.12149050543378767No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4810.11435799043767489No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4810.11435799043767489No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4740.11269373693858192No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4610.10960298044026637No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4310.10247046544415359No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4290.10199496444441275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)