FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420609
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30010.7134892501111484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13830.32880894132079913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13570.322627428324168No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9940.23632399687120342No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8930.21231119638429038No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7500.1783128749028195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7070.16808960340839116No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6380.15168481891733177No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6150.14621655742031198No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.13670653742549493No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5160.1226792579331398No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5150.12244150743326938No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4930.11721099643612No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4880.11602224393676788No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4840.11507124193728617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4770.11340698843819319No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4720.11221823593884105No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4620.1098407309401368No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4590.10912747944052553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.1079387269411734No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4410.10484797044285786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)