FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424622
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31070.7317096146690468No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14370.3384186405791504No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12620.297205514551766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10360.2439817060821154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8050.18958037972596803No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7980.18793185468487267No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7000.16485250410953742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6920.1629684754911427No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6090.14342167857529756No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.134708046215222No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5350.12599441385514645No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5290.12458139239135042No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5250.12363937808215306No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5250.12363937808215306No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5000.11775178864966958No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4930.11610326360857422No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4740.11162869563988677No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4690.11045117775339008No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4690.11045117775339008No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4640.10927365986689339No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4430.10432808474360726No Hit

[OK]Adapter Content

Adapter graph