FastQCFastQC Report
Sun 21 May 2023
EGAF00007927887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13410.32866116528887135No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12980.3181224403765511No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11500.28184961974809997No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8730.21396062438268806No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6720.16469821258323755No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6700.16420803933150172No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6320.154894747548521No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5450.1335722110980126No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5010.12278839955982442No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4950.12131787980461693No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4840.1186219269200699No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4790.11739649379073032No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4640.11372019440271165No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4520.11077915489229669No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4370.10710285550427799No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4140.10146586310931598No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4120.10097568985758015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)