FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411084
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23010.5597396152611145No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11200.2724503994317463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11020.26807173229802184No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10970.26685543587198723No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10550.25663854589329677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.2542059530412276No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9550.23231261737260508No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6660.1620106839478063No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6310.15349660896556422No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5980.14546905255373596No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5740.13963082970877No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.1325763104377694No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4610.11214253048038843No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4260.10362845549814637No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4220.10265541835731871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)