FastQCFastQC Report
Wed 8 May 2024
EGAF00007927893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410539
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGAAAC17330.42212798296873133No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11700.2849911945028365No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9830.23944131982588743No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9530.23213385330017366No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9300.22653146229712645No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7750.18877621858093874No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6920.16855889452646397No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6870.16734098343884504No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5530.13470096629065692No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4990.12154752654437216No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4780.11643229997637253No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4590.11180423784342049No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4200.1023045313599926No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4170.10157378470742123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)