FastQCFastQC Report
Sun 21 May 2023
EGAF00007927894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410539
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGGCGGTGGCATCGAAGCACTGGATGGCG18190.4430760536757774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16360.39850050786892355No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10320.2513768484845532No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.2501589373969343No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9940.2421207242186491No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9870.2404156486959826No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8480.2065577204601755No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7910.19267353406131937No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7060.17196904557179707No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.1442006727740848No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5890.1434699261215134No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5080.12373976650208629No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4940.12032961545675319No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4840.11789379328151527No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4820.11740662884646769No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4420.10766334014551601No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4400.10717617571046843No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4380.10668901127542085No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4380.10668901127542085No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG4370.10644542905789707No Hit

[OK]Adapter Content

Adapter graph