FastQCFastQC Report
Sun 21 May 2023
EGAF00007927902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371344
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36480.982377525959757No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC13150.35411909173165584No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11500.3096858977120945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7990.21516437588866388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5270.14191692877762938No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4550.12252789866000259No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4490.12091214615020035No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4390.11821922530052997No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4240.1141798440260244No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4140.11148692317635402No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4050.10906329441165066No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3910.10529320522211212No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3850.10367745271230987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)