FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393074
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCAGCGTGCAATCGACAAACGCCAGC14030.35693024723080136No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12220.3108829380727293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10220.2600019334781746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8380.21319140925118427No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5570.14170359779583488No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5320.13534347222151555No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4970.12643929641746846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4920.1251672713026046No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4770.121351195958013No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4470.11371904526882978No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4340.11041177997018373No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4090.1040516543958644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4050.10303403430397329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)