FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376820
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36810.9768589777612653No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC13420.35613820922456346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11990.31818905578260176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7620.20221856589353004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5160.13693540682554003No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4970.1318932116129717No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4910.13030093944058171No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4500.11942041292925004No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4420.11729738336606337No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4420.11729738336606337No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4020.10668223555013003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3990.10588609946393503No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3970.10535534207313836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)