FastQCFastQC Report
Sun 21 May 2023
EGAF00007927907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442208
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16510.3733537158984008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15770.35661950937115566No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15150.3425989579564368No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13790.3118442000144728No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13270.3000850278601925No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11810.26706889065779No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10900.2464903393877994No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9950.2250072364136334No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8120.18362399594760836No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7620.17231709964541572No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7430.16802047905058254No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7310.16530682393805632No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7220.16327158260366165No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7200.1628193067515739No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7090.16033178956509153No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC5800.13115999710543455No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5720.12935089369708375No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5610.12686337651060134No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5540.12528041102829438No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5410.1223406179897243No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5330.12053151458137348No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5290.11962696287719807No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5130.1160087560604964No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4860.1099030320573124No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4760.10764165279687388No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4690.10605868731456689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)