FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442208
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34040.7697735002532745No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23220.5250922642738259No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15990.3615945437441204No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14270.32269882046457776No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12880.29126564874448224No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11980.27091323540053547No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11200.253274477169115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10590.23948006368044No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8900.20126275417902886No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8280.18724220276431003No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8090.1829455821694768No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7690.17390006512772269No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7690.17390006512772269No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.17118641001519647No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6970.1576181344525653No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6750.15264310007960055No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6550.1481203415587235No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6210.1404316520732325No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6110.13817027281279398No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6040.13658730733048702No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5620.12708951443664518No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5610.12686337651060134No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5610.12686337651060134No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5500.12437585932411896No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5420.12256675591576814No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5330.12053151458137348No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5280.11940082495115421No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5020.11352123887401404No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC4690.10605868731456689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)