FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398543
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13370.33547195660192247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13290.33346464496930067No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12310.3088750774696833No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG10810.2712379843580241No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT10800.2709870704039464No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10710.26872884481724685No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10030.2516666959399613No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9870.24765207267471767No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8480.21277503305791345No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7940.19922567953771614No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7500.1881854655582961No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT7430.186429067879752No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7280.1826653585685861No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT7260.18216353066043062No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6730.16886509109431103No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6370.15983218874751282No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5920.14854106081401505No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5780.14502826545692685No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5240.13147891193672953No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5220.13097708402857408No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG5180.12997342821226318No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5070.12721337471740818No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5000.12545697703886405No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4890.12269692354400905No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT4830.12119143981954268No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4530.11366402119721085No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4530.11366402119721085No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4300.10789300025342309No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4300.10789300025342309No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4300.10789300025342309No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4300.10789300025342309No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG4210.10563477466672354No Hit
CGGAACTTTGTATTTTTTCAGGCGCAGCAGCTGCTCCAGATAAC4140.10387837698817945No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG4090.1026238072177908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)