FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007927910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398543
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40121.0066667837598453No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22300.5595381175933337No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15510.38916754277455634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14820.37185447994319304No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14300.35880695433115123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13440.3372283542804666No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG11190.2807727146129778No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG10960.27500169366919003No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10700.26847793086316907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10620.26647061923054727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10470.26270690991938134No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8670.21754239818539028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8260.20725492606820345No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG7610.1909455190531511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7330.18391992833897472No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG7270.18241444461450834No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6910.17338154226771013No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5920.14854106081401505No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5830.1462828352273155No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG5820.14603192127323777No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.14126455614576092No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5550.13925724451313912No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG5110.12821703053371908No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5030.12620971890109725No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC4890.12269692354400905No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC4810.12068961191138722No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4750.11918412818692087No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4550.1141658491053663No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4280.10739117234526763No Hit
ATGGAAGACATCAAGCAGATGGAAGCAGAAT4170.10463111885041262No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4110.10312563512594626No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG4090.1026238072177908No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG4090.1026238072177908No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4070.10212197930963535No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4060.10187106535555761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)