FastQCFastQC Report
Sun 21 May 2023
EGAF00007927911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403967
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13830.3423546972896301No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13680.3386415226986363No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13370.3309676285439157No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG11420.2826963588609961No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT11280.2792307292427352No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10710.26512066579695864No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10270.25422868699671014No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10100.25002042246025047No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8330.2062049622865234No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7910.19580807343174073No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7720.1911047189498152No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7560.18714399938608847No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT7270.17996519517683376No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7240.17922256025863498No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT7210.17847992534043622No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6590.1631321370309951No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6350.15719105768540498No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5550.1373874598667713No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG5440.13466446516670916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5200.12872338582111906No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5190.12847584084838612No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5060.12525775620285817No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4930.12203967155733017No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4920.12179212658459725No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT4800.1188215869118022No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4760.11783140702087051No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG4560.1128805075662121No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4480.11090014778434873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4450.11015751286614997No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT4400.10891978800248533No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4200.10396888854782693No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4160.10297870865689523No Hit
CGGAACTTTGTATTTTTTCAGGCGCAGCAGCTGCTCCAGATAAC4040.1000081689841002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)