FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007927912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007927912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403967
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37580.9302740075303181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21450.5309839665121161No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15970.39532932145447525No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14900.36884200937205264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14730.364633744835593No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13480.33369062324397786No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG11640.28814234826112034No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11340.2807159990791327No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG11260.27873563929726936No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10820.2678436604970208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9850.2438317981419274No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9110.22551347015969128No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8500.21041322682298305No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7730.19135226392254814No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7670.1898669940861506No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG7380.1826881898768959No Hit
GCTGTTACCACCGAAGTCGCATTCGGTCTGG7200.1782323803677033No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6520.16139932222186468No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5750.1423383593214297No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5640.1396153646213676No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5610.13887272970316883No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5470.13540710008490794No Hit
ATGGGTCTGATCTACAACCGTATGGGCACGG5470.13540710008490794No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.1329316503575787No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG5230.12946602073931782No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4800.1188215869118022No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4710.1165936821572059No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4570.11312805253894502No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC4450.11015751286614997No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4420.10941487794795118No Hit
CCACCGCGTACCCCGACTTGGGAATCTCCGG4370.10817715308428658No Hit
CCGCCTCGTACCCCAACCTGGGAATCTCCGG4200.10396888854782693No Hit
ATGGAAGACATCAAGCAGATGGAAGCAGAAT4070.10075080390229896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)