FastQCFastQC Report
Wed 31 May 2023
EGAF00007929737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530246
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23480.4428133356970161No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15530.29288292603810306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15380.2900540503841613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14960.2821331985531244No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13850.2611995187139554No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12540.23649400466953077No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12350.23291076217453788No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11010.2076394729993248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.1940608698604044No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10100.19047762736541152No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9660.18217959211384904No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9340.17614465738543997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8830.166526480162038No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8240.15539956925653375No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8100.1527592853128548No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7090.13371152257631364No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6940.1308826469223719No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6840.12899672981974405No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.11862418575529093No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6180.11654967694240033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6030.11372080128845856No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5520.10410262406505659No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5390.10165093183164041No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5330.1005193815700637No Hit

[OK]Adapter Content

Adapter graph