FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540329
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53770.9951344458653893No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17420.32239616974102814No Hit
TCTAACAGCGTAAACGGTTCTTCCCAGGCCG13330.2467015466502816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10420.19284547007471375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9330.17267257541238762No Hit
CGCGCTGCGGAAGTACAGGCGGACTACGCTT8730.16156822972670354No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6930.12825519266965127No Hit
TTCAAATACACTGTCGGTGAAGCCCCAGAAG6660.12325823711109342No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6600.12214780254252502No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6430.11900157126491452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)