FastQCFastQC Report
Wed 31 May 2023
EGAF00007929742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488120
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32320.6621322625583873No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31880.653118085716627No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22430.45951815127427675No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA11140.22822256822092926No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8740.17905433090223716No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT8230.16860608047201509No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7900.1618454478406949No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7560.15487994755388018No Hit
CGGCAGGTGACGACGCAGGGCGTTCGCCAGAGCAGCACCACCCT7280.14914365320003278No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6860.14053921166926167No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6760.13849053511431614No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6060.12414979922969761No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.12353519626321395No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA5940.12169138736376302No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5640.1155453576989265No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5520.11308694583299188No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5470.11206260755551914No Hit
GTCCGGGTTACGCTTACGGATCTCAGAGCCAGTAACCAGACCCA5450.11165287224453004No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5410.11083340162255184No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5320.10898959272310088No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5130.10509710726870443No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4970.10181922478079161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)