FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488120
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT75631.5494140785052857No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45190.9257969351798737No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22310.4570597394083422No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA11220.22986150946488568No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG8990.18417602228960092No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8270.16942555109399327No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7620.1561091534868475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7510.15385560927640743No Hit
TATGTTATGGACCAGGAACTGGCGGATCTGC7140.14627550602310907No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6970.14279275587970172No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.12927149061706136No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6140.12578874047365401No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6100.12496926985167582No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5900.12087191674178481No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA5860.1200524461198066No Hit
GAAGAGGTAGCCATTGCTCGCGCAACCGAAG5840.1196427108088175No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5610.11493075473244284No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5380.11021879865606818No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5290.10837498975661722No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5130.10509710726870443No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5090.10427763664672622No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4890.1001802835368352No Hit

[OK]Adapter Content

Adapter graph