FastQCFastQC Report
Wed 31 May 2023
EGAF00007929745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47221.051628219804106No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43330.964994721815161No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26110.5814911651648709No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22110.4924078767443622No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19520.4347264474920827No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC17340.38617605530290544No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15430.34363878508211254No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14930.33250337402954894No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14600.32515400273485695No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13490.3004333901981658No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12220.27214944612465425No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7480.16658574934635137No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6540.1456511765675318No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6510.144983051904378No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.13741097238863476No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5960.13273409974655803No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5950.13251139152550676No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5260.11714452427296902No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5070.11291306807299484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.11135411052563594No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4510.10044140769412363No Hit

[OK]Adapter Content

Adapter graph