FastQCFastQC Report
Wed 31 May 2023
EGAF00007929747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453718
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48491.0687255079146079No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38730.8536139187777431No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25590.5640067178291361No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22840.5033963827752039No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19860.4377168196985793No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC17630.38856734800029974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15660.3451483079798465No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15300.33721386411824084No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14650.32288778492367504No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13260.2922520155691421No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12060.26580386936378986No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8230.18139020272504067No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7270.16023168576075889No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.13819156392296536No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6180.13620795295756394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6120.13488554564729632No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6100.13444474321054048No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5890.12981631762460383No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5270.11615144208517185No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5220.11504943599328218No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4590.10116415923547226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)