FastQCFastQC Report
Wed 31 May 2023
EGAF00007929751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482748
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22740.471053220313704No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10120.20963318335860534No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9470.19616860142351703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8490.1758681548136916No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7600.15743203493333996No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7180.14873184352912908No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6470.13402437710772494No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6190.12822424950491768No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.11952405810070679No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5570.11538110981298731No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4930.102123675292285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)