FastQCFastQC Report
Sun 21 May 2023
EGAF00007929752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540007
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28540.528511667441348No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21620.40036518045136454No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16100.2981442833148459No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15580.2885147785121304No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14940.2766630802934036No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14390.2664780271366852No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14000.25925589853464864No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13070.24203389956056123No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12940.23962652335988238No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12560.23258957754251336No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11560.2140712990757527No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG11210.20758990161238652No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11110.20573807376571043No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10460.19370119276231604No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG10410.19277527883897802No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10200.18888644036095828No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9980.18481241909827095No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9590.17759029049623432No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9140.16925706518619205No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8970.1661089578468427No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8870.16425713000016667No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8760.162220119368823No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8350.15462762519745113No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7900.14629439988740886No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7790.1442573892560652No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7690.14240556140938915No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7670.14203519584005392No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7380.13666489508469334No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7330.13573898116135533No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7040.13036868040599475No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6930.12833166977465107No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6680.1237021001579609No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG6450.11944289611060598No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6370.11796143383326513No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6210.11499850927858342No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6030.11166521915456651No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6030.11166521915456651No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5980.11073930523122849No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5840.108146746245882No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5600.10370235941385944No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5570.10314681105985664No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5560.10296162827518901No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5550.10277644549052142No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5480.10148016599784816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)