FastQCFastQC Report
Sun 21 May 2023
EGAF00007929755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499531
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28330.5671319697876608No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25110.5026715058725084No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16790.336115276129009No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14980.2998812886487525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12520.25063509571978515No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10210.20439171943282797No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9900.19818589837267359No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9650.19318120396932323No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9490.189978199551179No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8870.17756655743087016No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8340.16695660529576742No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8200.16415397642989124No Hit
CGTGAAGAACGCGAGCAGGAACAGGGTTCCA6690.13392562223365517No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6590.13192374447231503No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6260.12531754785989258No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6060.12131379233721232No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5810.11630909793386196No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5570.11150459130664563No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5550.1111042157543776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.11030346464984155No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5500.11010327687370754No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5040.10089463917154291No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5040.10089463917154291No Hit

[OK]Adapter Content

Adapter graph