FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489439
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42800.8744705673229963No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16210.3311955115959292No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12900.263567063515576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10630.21718743295895912No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7910.16161360251226406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7330.14976330043171876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6460.13198784731090082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6070.12401954073949972No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5510.11257786976518014No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4970.10154482989708626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)