FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469971
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29400.6255705139253274No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27150.5776952194922665No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26620.5664179279147011No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14020.2983162790895608No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13790.2934223601030702No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT13710.29172012741211695No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12390.2636332880113879No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12180.2591649271976356No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10040.2136302027146356No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9050.19256507316408883No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8770.1866072587457524No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8710.18533058422753745No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8100.17235105995901875No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8050.17128716452717296No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7730.16447823376335985No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7220.15362650035853276No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7180.15277538401305613No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7010.1491581395447804No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6860.14596645324924304No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6730.14320032512644396No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6720.1429875460400748No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6390.13596583618989258No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6350.13511471984441595No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6240.13277414989435518No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6080.12936968451244865No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6070.1291569054260795No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5990.1274546727351262No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5990.1274546727351262No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5700.12128407923042059No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5600.11915628836672901No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5600.11915628836672901No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5010.10660232227094864No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4890.10404897323451873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)