FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469971
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63941.3605094782444023No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41490.8828204293456404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29170.6206765949388366No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16610.353426062459173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14700.3127852569626637No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14510.3087424543216496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14350.30533798893974307No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12830.2729955678116309No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11370.2419298212017337No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC10050.21384298180100475No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.20618293469171503No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9550.20320402748254682No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9050.19256507316408883No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8780.18682003783212156No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8150.17341495539086454No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8010.1704360481816963No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7960.1693721527498505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7570.16107376838145332No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7120.15149870949484118No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7060.15022203497662623No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6970.14830702319930378No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6720.1429875460400748No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6610.14064697609001406No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6530.1389447433990608No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.13830640613995332No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6490.13809362705358416No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5910.12575244004417294No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5710.12149685831678975No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5650.1202201837985748No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5650.1202201837985748No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5540.11787961384851406No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5410.11511348572571499No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4990.10617676409821032No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4880.10383619414814957No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4760.10128284511171967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)