FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470788
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41310.8774650161006653No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA38590.8196895417895103No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24880.5284756620814464No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21160.44945920456766103No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19260.40910133648266306No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18610.39529469740095335No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17110.36343322259700755No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14410.30608256794990524No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13900.2952496665165637No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12580.26721156868909146No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12310.26147650322438126No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11440.24299684783809272No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11140.23662455287730358No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10800.2294026185884092No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10420.22133104497140962No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT9940.21113537303414698No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8930.1896819799994902No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8770.18628342268706932No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8340.17714979990993823No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7970.16929063612496495No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7680.1631307509962021No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7580.16100665267593908No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7280.15463435771514994No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7090.15059857090665013No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7080.15038616107462383No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7000.14868688241841338No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6920.14698760376220293No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6900.14656278409815032No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6740.14316422678572946No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6500.13806639081709815No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6500.13806639081709815No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6490.13785398098507184No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6430.136579521992914No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA6220.1321189155203616No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5970.12680866971970398No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5800.1231977025752568No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5730.12171083375107268No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT5590.1187370961027044No Hit
GCCGCGGGTAATCTGGATCAGACGGTCAGAGTAGCCGCAGGCTT5470.11618817811838873No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5390.11448889946217831No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5370.11406407979812569No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5340.11342685030204679No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5100.10832901433341546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)