FastQCFastQC Report
Wed 31 May 2023
EGAF00007929768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462893
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33010.7131237672637089No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30290.6543628873195317No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21050.45474872162681224No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19180.4143506166651904No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18910.40851773520014345No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16610.3588302264238172No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14220.30719842382580853No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13900.3002853791264936No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13580.29337233442717864No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13240.2860272244341565No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11730.253406294759264No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11180.24152449918231644No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10870.23482748712985507No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10550.2279144424305401No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10450.22575411596200418No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10240.22121743037807873No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC9360.20220655745496258No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9320.20134242686754822No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8530.18427584776611441No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8470.18297965188499285No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8160.17628263983253148No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7970.17217801954231324No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7790.16828943189894857No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7720.16677720337097343No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7160.15467937514717223No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7150.15446334250031865No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7140.15424730985346508No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6980.1507907875038076No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6730.14538997133246775No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6440.1391250245737136No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6440.1391250245737136No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6130.13242801252125222No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5770.12465083723452287No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.12443480458766928No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5720.12357067400025491No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5690.12292257605969413No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5590.12076224959115822No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5310.11471333547925762No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5290.11428127018555045No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4890.10563996431140674No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4760.10283153990231003No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4670.10088724608062771No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4630.10002311549321334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)