FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443721
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31150.702017709326356No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28030.6317032549732828No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21080.4750733005649947No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17410.3923636699637836No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17320.39033536839590643No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16780.37816555898864374No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13340.30063936572756306No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13050.2941037273421812No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12800.28846955632030036No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12280.2767504805947882No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11190.2521854949393876No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10520.23708591660074685No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9890.22288780562560706No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9870.22243707194385662No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9780.22040877037597953No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9670.21792973512635194No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9530.21477459935409865No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC8500.19156181474394945No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8280.1866037442446943No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8260.18615301056294384No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8230.18547691004031813No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7930.17871590481406108No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7410.16699682908854888No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7390.16654609540679843No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7380.16632072856592317No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6770.15257335127253385No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6670.15031968286378153No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6400.14423477816015018No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6390.14400941131927494No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6350.143107943955774No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6250.14085427554702165No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5860.1320649687528875No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5570.12552933036750571No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5440.12259956143612766No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5230.11786685777774772No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5100.11493708884636968No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4840.10907755098361357No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4830.10885218414273834No Hit
GTGCAGGGCCAGCATGATAGCCTGCAGTTCGGTTTTGGAAATTG4600.10366874680260793No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4600.10366874680260793No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4550.10254191259823177No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4530.1020911789164813No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4510.10164044523473083No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4450.10028824418947943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)