FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443721
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70231.5827513234667732No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38980.8784799457316648No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28510.642520863335294No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18740.4223374598001897No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17960.4047588462119215No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17140.3862787652601522No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14250.3211477482472094No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14000.3155135772253285No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13600.30649890359031917No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13040.293878360501306No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11790.2657075053919017No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11750.26480603802840075No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10080.22716977560223653No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9990.22514147403435944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9730.21928193617160333No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9450.21297166462709677No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9290.20936579517309298No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8930.20125258890158457No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8470.19088571422132378No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC8420.18975888001694757No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.18863204581257143No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8260.18615301056294384No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7730.17420856799655637No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7420.16722219592942414No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7280.16406706015717085No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6970.15708068809003856No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6790.15302408495428435No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6530.14716454709152824No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6280.14153037606964736No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6100.13747377293389315No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5840.13161423507113704No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5770.1300366671850104No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5710.128684466139759No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5600.12620543089013142No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5420.12214882775437717No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5410.12192346091350195No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5310.11966979250474961No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5200.11719075725512203No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5100.11493708884636968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4930.11110585255149068No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.11042975202886499No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4890.11020438518798976No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4830.10885218414273834No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4780.10772534993836218No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4760.1072746162566117No Hit
GTTATTTCTCTGACTCGTCGCACCCGTCAGA4730.10659851573398599No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4680.10547168152960983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)