FastQCFastQC Report
Wed 31 May 2023
EGAF00007929773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398867
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11510.28856736706721786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10830.271519077787834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.21235148558291359No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8200.20558231189845236No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8170.20483018148906776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7760.19455106589414517No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7570.18978757330137616No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7310.18326910975337646No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7020.17599851579599216No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6970.1747449651136845No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC6520.1634630089729158No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6490.1627108785635312No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5590.14014696628199375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.13087069123291725No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5210.1306199810964557No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5040.12635790877660974No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4560.11432382222645644No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4210.10554896745030298No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4140.10379399649507229No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4080.10228973567630313No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3990.10003334444814939No Hit

[OK]Adapter Content

Adapter graph